Skip to main content
Top

16-11-2015 | Colorectal cancer | Article

RAS testing in metastatic colorectal cancer: advances in Europe

Journal: Virchows Archiv

Authors: J Han JM Van Krieken, Etienne Rouleau, Marjolijn J. L. Ligtenberg, Nicola Normanno, Scott D. Patterson, Andreas Jung

Publisher: Springer Berlin Heidelberg

Abstract

Personalized medicine shows promise for maximizing efficacy and minimizing toxicity of anti-cancer treatment. KRAS exon 2 mutations are predictive of resistance to epidermal growth factor receptor-directed monoclonal antibodies in patients with metastatic colorectal cancer. Recent studies have shown that broader RAS testing (KRAS and NRAS) is needed to select patients for treatment. While Sanger sequencing is still used, approaches based on various methodologies are available. Few CE-approved kits, however, detect the full spectrum of RAS mutations. More recently, “next-generation” sequencing has been developed for research use, including parallel semiconductor sequencing and reversible termination. These techniques have high technical sensitivities for detecting mutations, although the ideal threshold is currently unknown. Finally, liquid biopsy has the potential to become an additional tool to assess tumor-derived DNA. For accurate and timely RAS testing, appropriate sampling and prompt delivery of material is critical. Processes to ensure efficient turnaround from sample request to RAS evaluation must be implemented so that patients receive the most appropriate treatment. Given the variety of methodologies, external quality assurance programs are important to ensure a high standard of RAS testing. Here, we review technical and practical aspects of RAS testing for pathologists working with metastatic colorectal cancer tumor samples. The extension of markers from KRAS to RAS testing is the new paradigm for biomarker testing in colorectal cancer.
Literature
1.
Heinemann V, Douillard JY, Ducreux M, Peeters M (2013) Targeted therapy in metastatic colorectal cancer—an example of personalised medicine in action. Cancer Treat Rev 39:592–601CrossRefPubMed
2.
Vijayaraghavan A, Efrusy MB, Goke B, Kirchner T, Santas CC, Goldberg RM (2012) Cost-effectiveness of KRAS testing in metastatic colorectal cancer patients in the United States and Germany. Int J Cancer 131:438–445CrossRefPubMed
3.
Biomarkers Working Group (2001) Biomarkers and surrogate endpoints: preferred definitions and conceptual framework. Clin Pharmacol Ther 69:89–95CrossRef
4.
Ferlay J, Steliarova-Foucher E, Lortet-Tieulent J, Rosso S, Coebergh JW, Comber H, Forman D, Bray F (2013) Cancer incidence and mortality patterns in Europe: estimates for 40 countries in 2012. Eur J Cancer 49:1374–1403CrossRefPubMed
5.
Siddiqui AD, Piperdi B (2010) KRAS mutation in colon cancer: a marker of resistance to EGFR-I therapy. Ann Surg Oncol 17:1168–1176CrossRefPubMedPubMedCentral
6.
Lièvre A, Artru P, Guiu M, Laurent-Puig P, Merlin JL, Sabourin JC, Viguier J, Bastie A, Seronde A, Ducreux M (2013) The KRAS mutation detection within the initial management of patients with metastatic colorectal cancer: a status report in France in 2011. Eur J Cancer 49:2126–2133CrossRefPubMed
7.
Amado RG, Wolf M, Peeters M, Van Cutsem E, Siena S, Freeman DJ, Juan T, Sikorski R, Suggs S, Radinsky R, Patterson SD, Chang DD (2008) Wild-type KRAS is required for panitumumab efficacy in patients with metastatic colorectal cancer. J Clin Oncol 26:1626–1634CrossRefPubMed
8.
Douillard JY, Siena S, Cassidy J, Tabernero J, Burkes R, Barugel M, Humblet Y, Bodoky G, Cunningham D, Jassem J, Rivera F, Kocakova I, Ruff P, Blasinska-Morawiec M, Smakal M, et al. (2010) Randomized, phase III trial of panitumumab with infusional fluorouracil, leucovorin, and oxaliplatin (FOLFOX4) versus FOLFOX4 alone as first-line treatment in patients with previously untreated metastatic colorectal cancer: the PRIME study. J Clin Oncol 28:4697–4705CrossRefPubMed
9.
Peeters M, Price TJ, Cervantes A, Sobrero AF, Ducreux M, Hotko Y, Andre T, Chan E, Lordick F, Punt CJ, Strickland AH, Wilson G, Ciuleanu TE, Roman L, Van Cutsem E, et al. (2010) Randomized phase III study of panitumumab with fluorouracil, leucovorin, and irinotecan (FOLFIRI) compared with FOLFIRI alone as second-line treatment in patients with metastatic colorectal cancer. J Clin Oncol 28:4706–4713
10.
Van Cutsem E, Kohne CH, Hitre E, Zaluski J, Chang Chien CR, Makhson A, D’Haens G, Pinter T, Lim R, Bodoky G, Roh JK, Folprecht G, Ruff P, Stroh C, Tejpar S, et al. (2009) Cetuximab and chemotherapy as initial treatment for metastatic colorectal cancer. N Engl J Med 360:1408–1417CrossRefPubMed
11.
Van Cutsem E, Kohne CH, Lang I, Folprecht G, Nowacki MP, Cascinu S, Shchepotin I, Maurel J, Cunningham D, Tejpar S, Schlichting M, Zubel A, Celik I, Rougier P, Ciardiello F (2011) Cetuximab plus irinotecan, fluorouracil, and leucovorin as first-line treatment for metastatic colorectal cancer: updated analysis of overall survival according to tumor KRAS and BRAF mutation status. J Clin Oncol 29:2011–2019CrossRefPubMed
12.
Peeters M, Oliner KS, Price TJ, Cervantes A, Sobrero AF, Ducreux M, Hotko Y, Andre T, Chan E, Lordick F, Punt CJA, Strickland A, Wilson G, Ciuleanu T-E, Roman L, et al. (2014) Analysis of KRAS/NRAS mutations in phase 3 study 20050181 of panitumumab (pmab) plus FOLFIRI versus FOLFIRI for second-line treatment (tx) of metastatic colorectal cancer (mCRC). J Clin Oncol 32 (Suppl 3):Abstract #LBA387
13.
Tejpar S, Peeters M, Gelderblom H, Humblet Y, Vermoken J, De Hertogh G, Nippgen J, von Heydebreck A, Stroh C, Van Cutsem E (2008) Relationship of efficacy with KRAS status (wild type [wt] vs mutant [mt]) in patients with irinotecan-refractory metastatic colorectal cancer (mCRC), treated with irinotecan and escalating doses of cetuximab: preliminary data from the EVEREST study. Ann Oncol 19 (Suppl 8):viii125 (Abstract #358P)
14.
Douillard JY, Oliner KS, Siena S, Tabernero J, Burkes R, Barugel M, Humblet Y, Bodoky G, Cunningham D, Jassem J, Rivera F, Kocakova I, Ruff P, Blasinska-Morawiec M, Smakal M, et al. (2013) Panitumumab-FOLFOX4 treatment and RAS mutations in colorectal cancer. N Engl J Med 369:1023–1034CrossRefPubMed
15.
Bokemeyer C, Bondarenko I, Makhson A, Hartmann JT, Aparicio J, de Braud F, Donea S, Ludwig H, Schuch G, Stroh C, Loos AH, Zubel A, Koralewski P (2009) Fluorouracil, leucovorin, and oxaliplatin with and without cetuximab in the first-line treatment of metastatic colorectal cancer. J Clin Oncol 27:663–671CrossRefPubMed
16.
Pritchard CC, Grady WM (2011) Colorectal cancer molecular biology moves into clinical practice. Gut 60:116–129CrossRefPubMedPubMedCentral
17.
Heinemann V, von Weikersthal LF, Decker T, Kiani A, Vehling-Kaiser U, Al-Batran SE, Heintges T, Lerchenmuller C, Kahl C, Seipelt G, Kullmann F, Stauch M, Scheithauer W, Hielscher J, Scholz M, et al. (2014) FOLFIRI plus cetuximab versus FOLFIRI plus bevacizumab as first-line treatment for patients with metastatic colorectal cancer (FIRE-3): a randomised, open-label, phase 3 trial. Lancet Oncol 15:1065–1075CrossRefPubMed
18.
Schwartzberg LS, Rivera F, Karthaus M, Fasola G, Canon JL, Hecht JR, Yu H, Oliner KS, Go WY (2014) PEAK: a randomized, multicenter phase II study of panitumumab plus modified fluorouracil, leucovorin, and oxaliplatin (mFOLFOX6) or bevacizumab plus mFOLFOX6 in patients with previously untreated, unresectable, wild-type KRAS exon 2 metastatic colorectal cancer. J Clin Oncol 32:2240–2247CrossRefPubMed
19.
Peeters M, Oliner KS, Parker A, Siena S, Van Cutsem E, Huang J, Humblet Y, Van Laethem JL, Andre T, Wiezorek J, Reese D, Patterson SD (2013) Massively parallel tumor multigene sequencing to evaluate response to panitumumab in a randomized phase III study of metastatic colorectal cancer. Clin Cancer Res 19:1902–1912
20.
Peeters M, Douillard JY, Van Cutsem E, Siena S, Zhang K, Williams R, Wiezorek J (2013) Mutant KRAS codon 12 and 13 alleles in patients with metastatic colorectal cancer: assessment as prognostic and predictive biomarkers of response to panitumumab. J Clin Oncol 31:759–765
21.
De Roock W, Jonker DJ, Di Nicolantonio F, Sartore-Bianchi A, Tu D, Siena S, Lamba S, Arena S, Frattini M, Piessevaux H, Van Cutsem E, O’Callaghan CJ, Khambata-Ford S, Zalcberg JR, Simes J, et al. (2010) Association of KRAS p.G13D mutation with outcome in patients with chemotherapy-refractory metastatic colorectal cancer treated with cetuximab. JAMA 304:1812–1820
22.
De Roock W, Claes B, Bernasconi D, De Schutter J, Biesmans B, Fountzilas G, Kalogeras KT, Kotoula V, Papamichael D, Laurent-Puig P, Penault-Llorca F, Rougier P, Vincenzi B, Santini D, Tonini G, et al. (2010) Effects of KRAS, BRAF, NRAS, and PIK3CA mutations on the efficacy of cetuximab plus chemotherapy in chemotherapy-refractory metastatic colorectal cancer: a retrospective consortium analysis. Lancet Oncol 11:753–762CrossRefPubMed
23.
Andre T, Blons H, Mabro M, Chibaudel B, Bachet JB, Tournigand C, Bennamoun M, Artru P, Nguyen S, Ebenezer C, Aissat N, Cayre A, Penault-Llorca F, Laurent-Puig P, de Gramont A; GERCOR (2013) Panitumumab combined with irinotecan for patients with KRAS wild-type metastatic colorectal cancer refractory to standard chemotherapy: a GERCOR efficacy, tolerance, and translational molecular study. Ann Oncol 24:412–419
24.
Loupakis F, Ruzzo A, Cremolini C, Vincenzi B, Salvatore L, Santini D, Masi G, Stasi I, Canestrari E, Rulli E, Floriani I, Bencardino K, Galluccio N, Catalano V, Tonini G, et al. (2009) KRAS codon 61, 146 and BRAF mutations predict resistance to cetuximab plus irinotecan in KRAS codon 12 and 13 wild-type metastatic colorectal cancer. Br J Cancer 101:715–721CrossRefPubMedPubMedCentral
25.
Peeters M, Oliner KS, Price TJ, Cervantes A, Sobrero AF, Ducreux M, Hotko Y, Andre T, Chan E, Lordick F, Punt CJA, Strickland A, Wilson G, Ciuleanu TE, Roman L, et al. (2014) Updated analysis of KRAS/NRAS and BRAF mutations in study 20050181 of panitumumab (pmab) plus FOLFIRI for second-line treatment (tx) of metastatic colorectal cancer (mCRC). Poster presented at ASCO 2014
26.
Patterson SD, Peeters M, Siena S, Van Cutsem E, Humblet Y, Van Laethem JL, Andre T, Tian Y, Sidhu R, Oliner KS (2013) Comprehensive analysis of KRAS and NRAS mutations as predictive biomarkers for single agent panitumumab (pmab) response in a randomized, phase III metastatic colorectal cancer (mCRC) study (20020408). J Clin Oncol 31:3617(Abstract)
27.
Seymour MT, Brown SR, Middleton G, Maughan T, Richman S, Gwyther S, Lowe C, Seligmann JF, Wadsley J, Maisey N, Chau I, Hill M, Dawson L, Falk S, O’Callaghan A, et al. (2013) Panitumumab and irinotecan versus irinotecan alone for patients with KRAS wild-type, fluorouracil-resistant advanced colorectal cancer (PICCOLO): a prospectively stratified randomised trial. Lancet Oncol 14:749–759CrossRefPubMedPubMedCentral
28.
Van Cutsem E, Lenz HJ, Köhne CH, Heinemann V, Tejpar S, Melezínek I, Beier F, Stroh C, Rougier P, van Krieken JH, Ciardiello F (2015) Fluorouracil, leucovorin, and irinotecan plus cetuximab treatment and RAS mutations in colorectal cancer. J Clin Oncol 33:692–700CrossRefPubMed
29.
Maughan TS, Adams RA, Smith CG, Meade AM, Seymour MT, Wilson RH, Idziaszczyk S, Harris R, Fisher D, Kenny SL, Kay E, Mitchell JK, Madi A, Jasani B, James MD, et al. (2011) Addition of cetuximab to oxaliplatin-based first-line combination chemotherapy for treatment of advanced colorectal cancer: results of the randomised phase 3 MRC COIN trial. Lancet 377:2103–2114CrossRefPubMedPubMedCentral
30.
Stintzing S, Jung A, Rossius L, Modest DP, Fischer von Weikersthal L, Decker T, Kiani A, Al-Batran S-E, Vehling-Kaiser U, Heintges T, Moehler M, Scheithauer W, Kirchner T, Heinemann V (2014) Mutations within the EGFR signaling pathway: influence on efficacy in FIRE-3—a randomized phase III study of FOLFIRI plus cetuximab or bevacizumab as first-line treatment for wild-type (WT) KRAS (exon 2) metastatic colorectal cancer (mCRC) patients. J Clin Oncol 32 (Suppl 3):Abstract 445. Poster presented at ASCO 2014
31.
Bokemeyer C, Kohne C-H, Ciardiello F, Lenz H-J, Heinemann V, Klinkhardt U, Beier F, Duecker K, Tejpar S (2014) Treatment outcome according to tumor RAS mutation status in OPUS study patients with metastatic colorectal cancer (mCRC) randomized to FOLFOX4 with/without cetuximab. J Clin Oncol 32 (Suppl 5s):Abstract 3505. Poster presented at ASCO 2014
32.
Peeters M, Kafatos G, Taylor A, Gastanaga V, Yu H, Oliner KS, Hechmati G, Terwey J-H, van Krieken JH (2015) Prevalence of RAS mutations among patients with metastatic colorectal cancer by country and region in randomized clinical trials: a pooled analysis. Presented at ASCO-GI, San Francisco, CA, USA
33.
Sorich MJ, Wiese MD, Rowland A, Kichenadasse G, McKinnon RA, Karapetis CS (2015) Extended RAS mutations and anti-EGFR monoclonal antibody survival benefit in metastatic colorectal cancer: a meta-analysis of randomized, controlled trials. Ann Oncol 26:13–21CrossRefPubMed
34.
Amgen Europe BV (2013) Vectibix. EPAR product information. Amgen Europe B.V., Breda
35.
Merck KGaA (2009) Erbitux. EPAR product information. Merck KGaA, Darmstadt
36.
Finkelstein SD, Sayegh R, Christensen S, Swalsky PA (1993) Genotypic classification of colorectal adenocarcinoma. Biologic behavior correlates with K-ras-2 mutation type. Cancer 71:3827–3838CrossRefPubMed
37.
Finkelstein SD, Sayegh R, Bakker A, Swalsky P (1993) Determination of tumor aggressiveness in colorectal cancer by K-ras-2 analysis. Arch Surg 128:526–531 discussion 531–522
38.
National Comprehensive Cancer Network (2014) NCCN Clinical Practice Guidelines in Oncology™. Colon cancer. V3. National Comprehensive Cancer Network, Jamestown, PA
39.
AIO (2013) Statement der AIO-KRK Leitgruppe für die Antikörpertherapie in Kombination mit einer Chemotherapie. Arbeitsgemeinschaft Internistische Onkologie in der Deutschen Krebsgesellschaft e.V., Berlin
40.
Landelijke Werkgroep Gastro Intestinale Tumoren (2014) Algemeen. http://​www.​oncolinenl/​colorectaalcarci​noom. Accessed December 2014
41.
Van Cutsem E, Cervantes A, Nordlinger B, Arnold D (2014) Metastatic colorectal cancer: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up. Ann Oncol 25(Suppl 3):iii1–iii9CrossRefPubMed
42.
van Krieken JH, Jung A, Kirchner T, Carneiro F, Seruca R, Bosman FT, Quirke P, Flejou JF, Plato HT, De Hertogh G, Jares P, Langner C, Hoefler G, Ligtenberg M, Tiniakos D, et al. (2008) KRAS mutation testing for predicting response to anti-EGFR therapy for colorectal carcinoma: proposal for an European quality assurance program. Virchows Arch 453:417–431CrossRefPubMed
43.
Shackelford RE, Whitling NA, McNab P, Japa S, Coppola D (2012) KRAS testing: a tool for the implementation of personalized medicine. Genes Cancer 3:459–466CrossRefPubMedPubMedCentral
44.
Monzon FA, Ogino S, Hammond ME, Halling KC, Bloom KJ, Nikiforova MN (2009) The role of KRAS mutation testing in the management of patients with metastatic colorectal cancer. Arch Pathol Lab Med 133:1600–1606PubMed
45.
Tembuyser L, Ligtenberg MJ, Normanno N, Delen S, van Krieken JH, Dequeker EM (2014) Higher quality of molecular testing, an unfulfilled priority: results from external quality assessment for KRAS mutation testing in colorectal cancer. J Mol Diagn 16:371–377CrossRefPubMed
46.
Morey M, Fernandez-Marmiesse A, Castineiras D, Fraga JM, Couce ML, Cocho JA (2013) A glimpse into past, present, and future DNA sequencing. Mol Genet Metab 110:3–24CrossRefPubMed
47.
Tol J, Dijkstra JR, Vink-Borger ME, Nagtegaal ID, Punt CJ, van Krieken JH, Ligtenberg MJ (2010) High sensitivity of both sequencing and real-time PCR analysis of KRAS mutations in colorectal cancer tissue. J Cell Mol Med 14:2122–2131CrossRefPubMedPubMedCentral
48.
Carotenuto P, Roma C, Rachiglio AM, Tatangelo F, Pinto C, Ciardiello F, Nappi O, Iaffaioli RV, Botti G, Normanno N (2010) Detection of KRAS mutations in colorectal carcinoma patients with an integrated PCR/sequencing and real-time PCR approach. Pharmacogenomics 11:1169–1179CrossRefPubMed
49.
Milbury CA, Li J, Makrigiorgos GM (2009) PCR-based methods for the enrichment of minority alleles and mutations. Clin Chem 55:632–640CrossRefPubMedPubMedCentral
50.
Carotenuto P, Roma C, Cozzolino S, Fenizia F, Rachiglio AM, Tatangelo F, Iannaccone A, Baron L, Botti G, Normanno N (2012) Detection of KRAS mutations in colorectal cancer with Fast COLD-PCR. Int J Oncol 40:378–384PubMed
51.
Parsons BL, Heflich RH (1997) Genotypic selection methods for the direct analysis of point mutations. Mutat Res 387:97–121CrossRefPubMed
52.
Gocke CD, Benko FA, Kopreski MS, Evans DB (2000) Enrichment methods for mutation detection. Ann N Y Acad Sci 906:31–38CrossRefPubMed
53.
Chang YS, Er TK, Lu HC, Yeh KT, Chang JG (2014) Detection of KRAS codon 12 and 13 mutations by mutant-enriched PCR assay. Clin ChimActa 436C:169–175CrossRef
54.
Hoff KJ (2009) The effect of sequencing errors on metagenomic gene prediction. BMC Genomics 10:520CrossRefPubMedPubMedCentral
55.
Ibrahem S, Seth R, O’Sullivan B, Fadhil W, Taniere P, Ilyas M (2010) Comparative analysis of pyrosequencing and QMC-PCR in conjunction with high resolution melting for KRAS/BRAF mutation detection. Int J Exp Pathol 91:500–505CrossRefPubMedPubMedCentral
56.
Balzer S, Malde K, Jonassen I (2011) Systematic exploration of error sources in pyrosequencing flowgram data. Bioinformatics 27:i304–i309CrossRefPubMedPubMedCentral
57.
Ciardiello F, Normanno N, Maiello E, Martinelli E, Troiani T, Pisconti S, Giuliani F, Barone C, Carteni G, Rachiglio AM, Montesarchio V, Tonini G, Rizzi D, Cinieri S, Bordonaro R, et al. (2014) Clinical activity of FOLFIRI plus cetuximab according to extended gene mutation status by next-generation sequencing: findings from the CAPRI-GOIM trial. Ann Oncol 25:1756–1761CrossRefPubMed
58.
Moorthie S, Mattocks CJ, Wright CF (2011) Review of massively parallel DNA sequencing technologies. HUGO J 5:1–12CrossRefPubMedPubMedCentral
59.
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira CR, Cox AJ, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456:53–59CrossRefPubMedPubMedCentral
60.
Roche (2014) The technology. http://​454.​com/​products/​technologyasp. Accessed December 2014
61.
Illumina (2014) Sequencing systems. http://​www.​illumina.​com/​systems/​sequencingilmn. Accessed December 2014
63.
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13:341CrossRefPubMedPubMedCentral
64.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (2012) Comparison of next-generation sequencing systems. J Biomed Biotechnol 2012:251364PubMedPubMedCentral
65.
Ross MG, Russ C, Costello M, Hollinger A, Lennon NJ, Hegarty R, Nusbaum C, Jaffe DB (2013) Characterizing and measuring bias in sequence data. Genome Biol 14:R51CrossRefPubMedPubMedCentral
66.
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, et al. (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475:348–352CrossRefPubMed
67.
Tops BB, Normanno N, Kurth H, Amato E, Mafficini A, Rieber N, Le Corre D, Rachiglio AM, Reiman A, Sheils O, Noppen C, Lacroix L, Cree IA, Scarpa A, Ligtenberg MJ, Laurent-Puig P (2015) Development of a semi-conductor sequencing-based panel for genotyping of colon and lung cancer by the OncoNetwork Consortium. BMC Cancer 15:26CrossRefPubMedPubMedCentral
68.
Vogelstein B, Kinzler KW (1999) Digital PCR. Proc Natl Acad Sci U S A 96:9236–9241CrossRefPubMedPubMedCentral
69.
Li M, Chen WD, Papadopoulos N, Goodman SN, Bjerregaard NC, Laurberg S, Levin B, Juhl H, Arber N, Moinova H, Durkee K, Schmidt K, He Y, Diehl F, Velculescu VE, et al. (2009) Sensitive digital quantification of DNA methylation in clinical samples. Nat Biotechnol 27:858–863CrossRefPubMedPubMedCentral
70.
Hiatt JB, Pritchard CC, Salipante SJ, O’Roak BJ, Shendure J (2013) Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation. Genome Res 23:843–854CrossRefPubMedPubMedCentral
71.
Bettegowda C, Sausen M, Leary RJ, Kinde I, Wang Y, Agrawal N, Bartlett BR, Wang H, Luber B, Alani RM, Antonarakis ES, Azad NS, Bardelli A, Brem H, Cameron JL, et al. (2014) Detection of circulating tumor DNA in early- and late-stage human malignancies. Sci Transl Med 6:224ra224
72.
Dressman D, Yan H, Traverso G, Kinzler KW, Vogelstein B (2003) Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations. Proc Natl Acad Sci U S A 100:8817–8822CrossRefPubMedPubMedCentral
73.
Tejpar S, Lenz H-J, Köhne C-H, Heinemann V, Ciardiello F, Esser R, Beier F, Stroh C, Duecker C, Bokemeyer C (2014) Effect of KRAS and NRAS mutations on treatment outcomes in patients with metastatic colorectal cancer (mCRC) treated first-line with cetuximab plus FOLFOX4: new results from the OPUS study. J Clin Oncol 32 (Suppl 3):Abstract #LBA444
74.
Ciardiello F, Lenz H-J, Kohne CH, Heinemann V, Tejpar S, Esser R, Beier F, Stroh C, Duecker C, Van Cutsem E (2014) Effect of KRAS and NRAS mutational status on first-line treatment with FOLFIRI plus cetuximab in patients with metastatic colorectal cancer (mCRC): new results from the CRYSTAL trial. J Clin Oncol 32 (Suppl 3):Abstract #LBA443
75.
Azuara D, Ginesta MM, Gausachs M, Rodriguez-Moranta F, Fabregat J, Busquets J, Pelaez N, Boadas J, Galter S, Moreno V, Costa J, de Oca J, Capella G (2012) Nanofluidic digital PCR for KRAS mutation detection and quantification in gastrointestinal cancer. Clin Chem 58:1332–1341
76.
Taly V, Pekin D, Benhaim L, Kotsopoulos SK, Le CD, Li X, Atochin I, Link DR, Griffiths AD, Pallier K, Blons H, Bouche O, Landi B, Hutchison JB, Laurent-Puig P (2013) Multiplex picodroplet digital PCR to detect KRAS mutations in circulating DNA from the plasma of colorectal cancer patients. Clin Chem 59:1722–1731CrossRefPubMed
77.
European Commission (1998) Directive 98/79/EC of the European Parliament and of the Council of 27 October 1998 on in vitro diagnostic medical devices. http://​www.​emergogroup.​com/​sites/​default/​files/​file/​in-vitro-diagnostics-directive-98-79-ec-v2_​0.​pdf. Accessed December 2014
78.
Transgenomic Inc. (2013) Instructions for use for the CRC RAScan™ Combination Kit. http://​worldtransgenomi​c.​com/​files/​literature/​482427-EN.​pdf. Accessed December 2014
79.
Transgenomic Inc. (2013) Instructions for use for the CRC RASseq™ kit. http://​worldtransgenomi​c.​com/​files/​literature/​482482-EN.​pdf. Accessed December 2014
80.
Qiagen (2011) Therascreen KRAS Pyro Kit handbook v1. http://​tinyurl.​com/​lkbdk2f. Accessed December 2014
81.
Qiagen (2011) Therascreen NRAS Pyro Kit handbook v1. http://​tinyurl.​com/​m64zerb. Accessed December 2014
83.
Sequenom (2010) A rapid and highly sensitive method for somatic mutation profiling using the Sequenom MassARRAY® system. http://​www.​biotechniques.​com/​protocols/​A-rapid-and-highly-sensitive-method-for-somatic-mutation-profiling—using-the-Sequenom-MassARRAY-System/​biotechniques-312575.​html. Accessed December 2014
84.
Qiagen (2012) Therascreen KRAS RGQ PCR kit handbook. http://​www.​accessdatafda.​gov/​cdrh_​docs/​pdf11/​P110030c.​pdf. Accessed December 2014
85.
Roche (2014) cobas® KRAS mutation test. http://​molecularroche.​com/​assays/​Pages/​cobasKRASMutatio​nTestaspx. Accessed December 2014
86.
Randox (2014) KRAS/BRAF/PIK3CA array. http://​www.​randox.​com/​kras-colorectal-molecular-test.​php. Accessed December 2014
87.
AutoGenomics (2014) INFINITI® KRAS. http://​www.​autogenomics.​com/​?​q=​node/​199. Accessed December 2014
88.
Farina Sarasqueta A, Moerland E, de Bruyne H, de Graaf H, Vrancken T, van Lijnschoten G, van den Brule AJ (2011) SNaPshot and StripAssay as valuable alternatives to direct sequencing for KRAS mutation detection in colon cancer routine diagnostics. J Mol Diagn 13:199–205CrossRefPubMedPubMedCentral
89.
EnteroGen (2014) K-Ras and B-Raf mutation analysis kits. http://​www.​entrogen.​com/​web2/​k-ras-braf-mutation-test-kit. Accessed December 2014
90.
Tib Molbiol (2014) Oligonucleotides, design for PCR and LightCycler. http://​www.​roche-ases/​logs/​LightMix%C2%AE_​40-0654-16_​NRAS-KRAS_​V131201a.​pdf. Accessed December 2014
91.
Panagene (2012) PNAClamp™ KRAS mutation detection kit (Ver. 2). http://​www.​pnabio.​com/​pdf/​PNAClamp_​KRAS_​Manual_​v12.​pdf. Accessed December 2014
92.
AB Analitica (2014) REALQUALITY RI-KRAS MuST technical leaflet. http://​www.​abanaliticait/​download/​?​ID=​545. Accessed December 2014
93.
Qiagen (2013) RAS extension pyro kit handbook. http://​tinyurl.​com/​qedz9wm. Accessed December 2014
94.
Oeth P, del Mistro G, Marnellos G, Shi T, van den Boom D (2009) Qualitative and quantitative genotyping using single base primer extension coupled with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MassARRAY). Methods Mol Biol 578:307–343
95.
Domagala P, Hybiak J, Sulzyc-Bielicka V, Cybulski C, Rys J, Domagala W (2012) KRAS mutation testing in colorectal cancer as an example of the pathologist’s role in personalized targeted therapy: a practical approach. Pol J Pathol 63:145–164CrossRefPubMed
96.
Newton CR, Graham A, Heptinstall LE, Powell SJ, Summers C, Kalsheker N, Smith JC, Markham AF (1989) Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res 17:2503–2516CrossRefPubMedPubMedCentral
97.
Mixich F, Ioana M, Voinea F, Saftoiu A, Ciurea T (2007) Noninvasive detection through REMS-PCR technique of K-ras mutations in stool DNA of patients with colorectal cancer. J Gastrointestin Liver Dis 16:5–10PubMed
98.
Amicarelli G, Shehi E, Makrigiorgos GM, Adlerstein D (2007) FLAG assay as a novel method for real-time signal generation during PCR: application to detection and genotyping of KRAS codon 12 mutations. Nucleic Acids Res 35:e131CrossRefPubMedPubMedCentral
99.
Kimura K, Nagasaka T, Hoshizima N, Sasamoto H, Notohara K, Takeda M, Kominami K, Iishii T, Tanaka N, Matsubara N (2007) No duplicate KRAS mutation is identified on the same allele in gastric or colorectal cancer cells with multiple KRAS mutations. J Int Med Res 35:450–457CrossRefPubMed
100.
Khanna M, Park P, Zirvi M, Cao W, Picon A, Day J, Paty P, Barany F (1999) Multiplex PCR/LDR for detection of K-ras mutations in primary colon tumors. Oncogene 18:27–38CrossRefPubMed
101.
Tsiatis AC, Norris-Kirby A, Rich RG, Hafez MJ, Gocke CD, Eshleman JR, Murphy KM (2010) Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications. J Mol Diagn 12:425–432CrossRefPubMedPubMedCentral
102.
Blons H, Rouleau E, Charrier N, Chatellier G, Cote JF, Pages JC, de Fraipont F, Boyer JC, Merlio JP, Morel A, Gorisse MC, de Cremoux P, Leroy K, Milano G, Ouafik L, et al. (2013) Performance and cost efficiency of KRAS mutation testing for metastatic colorectal cancer in routine diagnosis: the MOKAECM study, a nationwide experience. PLoS One 8:e68945
103.
Laurent-Puig P, Pekin D, Normand C, Kotsopoulos SK, Nizard P, Perez-Toralla K, Rowell R, Olson J, Srinivasan P, Le Corre D, Hor T, El Harrak Z, Li X, Link DR, Bouche O, et al. (2015) Clinical relevance of KRAS-mutated subclones detected with picodroplet digital PCR in advanced colorectal cancer treated with anti-EGFR therapy. Clin Cancer Res 21:1087–1097CrossRefPubMed
104.
van Krieken JH, Siebers AG, Normanno N (2013) European consensus conference for external quality assessment in molecular pathology. Ann Oncol 24:1958–1963CrossRefPubMed
105.
Bennett NC, Farah CS (2014) Next-generation sequencing in clinical oncology: next steps towards clinical validation. Cancers (Basel) 6:2296–2312CrossRef
106.
Weiss MM, Van der Zwaag B, Jongbloed JD, Vogel MJ, Brüggenwirth HT, Lekanne Deprez RH, Mook O, Ruivenkamp CA, van Slegtenhorst MA, van den Wijngaard A, Waisfisz Q, Nelen MR, van der Stoep N (2013) Best practice guidelines for the use of next-generation sequencing applications in genome diagnostics: a national collaborative study of Dutch genome diagnostic laboratories. Hum Mutat 34:1313–1321CrossRefPubMed
107.
Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN, Holm IA, Luquette LJ, Lyon E, Majzoub J, Neupert P, et al. (2014) An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol 15:R53
108.
College of American Pathologists (2014) Accreditation and laboratory improvement. http://​www.​cap.​org/​apps/​capportal?​_​nfpb=​true&​_​pageLabel=​accreditation. Accessed December 2014
109.
UK NEQAS (2014) United Kingdom National External Quality Assessment Service. http://​www.​ukneqas.​org.​uk/​content/​PageServerasp?​S=​977247289&​C=​1252&​CID=​1&​type=​G. Accessed December 2014
110.
EMQN (2014) European Molecular Genetics Quality Network. http://​www.​emqn.​org. Accessed December 2014
111.
DGKL (2014) The German Society For Clinical Chemistry And Laboratory Medicine. http://​www.​dgkl.​de/​. Accessed December 2014
112.
Normanno N, Pinto C, Castiglione F, Bardelli A, Gambacorta M, Botti G, Nappi O, Siena S, Ciardiello F, Taddei G, Marchetti A (2011) KRAS mutations testing in colorectal carcinoma patients in Italy: from guidelines to external quality assessment. PLoS One 6:e29146CrossRefPubMedPubMedCentral
113.
European Society of Pathology (2013) Gen&Tiss. http://​kraseqascheme.​org/​info/​public/​gen_​tissx.​html. Accessed December 2014
114.
Gen&Tiss (2014) Accueil. http://​www.​genetiss.​org/​. Accessed December 2014
115.
European Society of Pathology (2014) Colon external quality assessment scheme. http://​kraseqascheme.​org/​. Accessed December 2014
116.
Cree IA, Deans Z, Ligtenberg MJ, Normanno N, Edsjo A, Rouleau E, Sole F, Thunnissen E, Timens W, Schuuring E, Dequeker E, Murray S, Dietel M, Groenen P, van Krieken JH (2014) Guidance for laboratories performing molecular pathology for cancer patients. J Clin Pathol 67:923–931
117.
OECD (2014) Guidelines for quality assurance in genetic testing. http://​www.​oecdorg/​sti/​biotech/​oecdguidelinesfo​rqualityassuranc​eingenetictestin​g.​htm. Accessed December 2014
118.
van Krieken JH, Normanno N, Blackhall F, Boone E, Botti G, Carneiro F, Celik I, Ciardiello F, Cree IA, Deans ZC, Edsjo A, Groenen PJ, Kamarainen O, Kreipe HH, Ligtenberg MJ, et al. (2013) Guideline on the requirements of external quality assessment programs in molecular pathology. Virchows Arch 462:27–37CrossRefPubMed
120.
Dubbink HJ, Deans ZC, Tops BB, van Kemenade FJ, Koljenovic S, van Krieken HJ, Blokx WA, Dinjens WN, Groenen PJ (2014) Next generation diagnostic molecular pathology: critical appraisal of quality assurance in Europe. Mol Oncol 8:830–839CrossRefPubMed
121.
Berwouts S, Morris MA, Dequeker E (2010) Approaches to quality management and accreditation in a genetic testing laboratory. Eur J Hum Genet 18(Suppl 1):S1–19CrossRefPubMedPubMedCentral
122.
Mattocks CJ, Morris MA, Matthijs G, Swinnen E, Corveleyn A, Dequeker E, Muller CR, Pratt V, Wallace A (2010) A standardized framework for the validation and verification of clinical molecular genetic tests. Eur J Hum Genet 18:1276–1288CrossRefPubMedPubMedCentral
123.
Deans ZC, Bilbe N, O’Sullivan B, Lazarou LP, de Castro DG, Parry S, Dodson A, Taniere P, Clark C, Butler R (2013) Improvement in the quality of molecular analysis of EGFR in non-small-cell lung cancer detected by three rounds of external quality assessment. J Clin Pathol 66:319–325CrossRefPubMed